RNA-seq replication analysis.

Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

Predict circRNA pipeline

Simple Snakemake RNA-Seq pipeline

Adjustments to bschiffthaler/ngs docker

Introduction to Bioinformatics workflows with Nextflow

A basic pipeline for the analysis of RNASeq data. Entirely done in Bash and R script.

In this repository : i have created RNAseq pipeline using snakemake rules

A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)

R pipeline to process RNA seq data using Limma-Voom.

A book that discusses topics and contains tutorials relevant to population genomics

An RNASeq snakemake workflow using the Tuxedo suite.

RNA-seq for rare diseases pipeline using nextflow

RNAseq Data Processing and Analysis Pipeline

A python package for working with inputs to and outputs from the toil-rnaseq pipeline

circs_snake : a snakemake-based circRNA detection workflow

Snakemake workflow for Salmon quantification and FastQC quality controls

Pipeline for calling and analyzing variants from RNA-Seq data

These snakefiles are prepared for the snakemake pipeline for the RNASeq analysis