Informal summaries of notable SARS-CoV-2 lineages
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Dec 20, 2024
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sars-cov-2-variants
Here are 22 public repositories matching this topic...
Repository to propose and discuss lineages
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Dec 20, 2024 - Python
bvas: bayesian viral allele selection
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Jul 26, 2024 - Python
SARS-CoV-2 variant growth rates and frequency forecasts
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Dec 18, 2024 - Python
This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
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Nov 20, 2023 - Python
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
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Apr 23, 2023 - Vue
Download raw data and turn it into useful dataset
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Feb 20, 2024 - Python
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
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Apr 29, 2024 - Jupyter Notebook
Spike-only SARS-CoV-2 Nextstrain build
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Dec 13, 2023 - Python
BA.2.86 project with Sigal lab
bioinformatics snakemake computational-biology phylogenetics nextstrain treetime sars-cov-2 virus-evolution genomic-epidemiology sars-cov-2-variants
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Nov 8, 2023 - Python
Minor Allele Detection Pipeline for SARS-CoV2
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Jul 15, 2021 - Python
Datové sady mutací viru Sars-Cov-2 zjištěných Diskriminačními RT-PCR testy v ČR a to převážně z laboratoří ve FNB.
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Apr 22, 2023
Repository to discuss SARS-CoV-2 sequence quality
bioinformatics quality-control genomics sequencing-error sars-cov-2 virus-evolution sequencing-data sars-cov-2-variants
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Jan 21, 2024
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
sars-cov-2 robert-koch-institut wastewater-surveillance sars-cov-2-variants public-health-surveillance
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Dec 27, 2024 - HTML
Datové sady mutací viru Sars-Cov-2 zjištěných Diskriminačními RT-PCR testy v ČR a to převážně z laboratoří ve VFN.
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Apr 16, 2023
Rozšíření do prohlížeče obsahující automatický skript vypisující všechny odhalené mutace.
browser-extension google-chrome-extension mozilla-firefox-extension automation-tool microsoft-edge-extension covid-19 sars-cov-2 sars-cov-2-variants
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Apr 21, 2023 - JavaScript
Zobrazuje data pocházející z období 1.9.2021 - 8.2.2022 z VFN a FNB (Delta podzim a Omikron počátek roku). Data obsahují detekované mutace diskriminačními PCR testy, jejich rozložení v čase a srovnání s celogenomově sekvenovanými vzorky ze stejného období co se týče pohlaví.
statistics mutations delta fnb age sex omicron czechia covid-19 sars-cov-2 sars-cov-2-variants vfn bulovka
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Apr 22, 2023
Shiny app for creating Venn diagrams of SARS-CoV-2 variant/lineage mutations.
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Dec 8, 2022 - R
Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
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May 9, 2024 - Python
A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.
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Sep 16, 2022 - Python
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