Compare ranks

The gpseqc_compare script allows to compare different regional centrality ranks. Run gpseqc_compare -h for more details.

Minimum options

The minimum input of the gpseqc_compare script are 2 ranking tables (generated with gpseqc_estimate).

Additional settings

• -o to provide the path to an output directory, created if missing. Defaults to current directory.
• -d to select the distance type, can be one of: 'kt' (Kendall tau), 'ktw' (weighted Kendall tau), or 'emd' (Earth Mover's Distance). Default: 'ktw'
• -n to specify the number of iterations to build the random distribution. Default: 5000
• -t to provide a number of threads to be used for parallelization (default: 1).
• -D to change the ranking file field delimiter. Default: TAB
• -p to add a prefix to the output.
• -s to add a suffix to the output.
• -S to specify the seed for random number generator.
• -y to skip the settings confirmation and proceed.
• --no-test to calculate only distances, no shuffling/p-value.
• --no-plot to turn off plotting.