Install

On Mac

Since Mac computers are Unix-based, use the commands for Linux. But note that python3 and pip3 are required. If not available, install them using brew install (homebrew).

On Linux

To install, run the following:

git clone http://github.com/ggirelli/gpseqc
cd gpseqc
sudo -H pip3 install .

To test your installation, run: pytest-3 --pyargs gpseqc. Did the test fail? Let us know by opening a new issue, and we'll help you fix the issue.

To uninstall run the following from within the repository folder:

sudo -H pip3 uninstall gpseqc

To update, first uninstall, and then run the following from within the repository folder.

git pull
sudo -H pip3 install .

Additional dependencies

Most of the required dependencies are automatically install by pip3. Still, some require some manual steps. Specifically, gpseqc requires the following packages:

• tkinter

That on Ubuntu can be easily installed with:

sudo apt install python3-tk

On Windows

We do not offer instructions for Windows setup, but the package, being Python3-pure, is compatible with the Microsoft OS. We warmly welcome any contribution regarding the proper instructions for this system! Check out our contributing guidelines for more details.

Got stuck?

Did you encounter an issue or got stuck during installation? Let us know by opening a new issue, and we'll help you through the process.