Pipeline to calculate local ancestries using RFMix 1.5 or RFMix 2.0 and Beagle5 or ShapeIT

skeleton for building new beagle apps

The PhenoDist pipeline is built for generating phenotype distributions for alleles in variant positions and utilizing statistical methods to test for variant position significance.

On the BeagleBone, applications have been created using PRUs with shared memory. With the applications in this repo, you will learn how to use BeagleBone PRUs and how to utilize shared memory.

App Android utilizando Beagle, framework open source que utiliza Server-Driven UI para facilitar o desenvolvimento cross-platform.

Dog Breed classifier using Transfer learning

KiwiSDR: BeagleBone web-accessible shortwave receiver and software-defined GPS

Beagle to EMI converter

convert genotype array output into annotated IBD segments

LCD platform driver

Cut and parse DJI DUML packets out of an exported USB Beagle stream

hms cutie beagle pie

The AlleleCatalog pipeline is built for generating Allele Catalog datasets using next-generation sequencing (NGS) based genetic data and metadata.

An ahead-of-time compiler for Beagle programming language

An R package to estimate the quality of imputation of genotypes.

Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.

Imputation-beagle-tutorial

KiwiSDR: BeagleBone web-accessible shortwave receiver and software-defined GPS