Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

frequency of high level ranks in sequence databases

Package for fetching metadata and downloading data from SRA/ENA/GEO

A command-line tool for retrieving annotations from the NCBI SRA.

🔬 Влияние меди на антибиотикорезистентность у синегнойной палочки

tair id to pubmed links for articls, genes, annotations, locus tag

explore sra databases and sequence retrieval

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

ARA.v1.6.0

A tool to prepare files and run/monitor programmatic submissions to NCBI

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

fast utils for fetch and dump NCBI SRA archive raw data

Data and code used in the Plant Genomes dashboard

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Pulls Metadata from NCBI based on Sample name or SRR #

Extract metadata from biosamples in NCBI

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

The Docker integration for the r2g project.

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA