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Core Project Overview

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Robert J. Gifford edited this page Oct 3, 2024 · 10 revisions

The Parvovirus-GLUE core project provides a minimal set of essential data components for performing comparative genomic analysis of parvoviruses.

The data items included in the core project are:

  1. A set of parvovirus genome feature definitions covering all genera.

  2. An annotated reference genome sequence for each parvovirus genus (i.e. one species per genus).

  3. A hierarchically arranged set of multiple sequence alignments representing sequence homology among parvovirus reference sequences.

Parvovirus-GLUE by Robert J Gifford Lab.

For questions, issues, or feedback, please open an issue on the GitHub repository.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Native Installation
  5. Docker Installation
  6. Usage Overview

GLUE Concepts

  1. Project Data Model
  2. Command Layer
  3. Modules
  4. Alignment Tree
  5. Variations
  6. Scripting Layer

Parvovirus Core Project

  1. Overview
  2. Schema Extensions
  3. Genome Features
  4. Sequence Data
  5. Alignments
  6. Project Extensions

Usage

  1. Interacting with Parvovirus-GLUE

Genus-Level Extensions

EVE Extension

  1. Background
  2. Schema Extensions
  3. Sequence Data
  4. Reference Sequences
  5. Metadata
  6. Alignments
  7. Nomenclature
  8. Phylogenies

Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
  4. Related Publications
  5. ICTV Parvoviridae
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